PySeqLab
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PySeqLab
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pyseqlab package
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PySeqLab
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A
accumulate_activefeatures() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
add_child() (pyseqlab.utilities.BoundNode method)
aextractor_obj (pyseqlab.workflow.GenericTrainingWorkflow attribute)
aggregate_gfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
aggregate_seq_features() (pyseqlab.features_extraction.FeatureExtractor method)
aggregate_weightedsample() (in module pyseqlab.utilities)
apply_filter() (pyseqlab.features_extraction.FeatureFilter method)
AStarAgenda (class in pyseqlab.utilities)
AStarNode (class in pyseqlab.utilities)
attr_desc (pyseqlab.attributes_extraction.GenericAttributeExtractor attribute)
(pyseqlab.attributes_extraction.NERSegmentAttributeExtractor attribute)
(pyseqlab.features_extraction.FOFeatureExtractor attribute)
(pyseqlab.features_extraction.FeatureExtractor attribute)
attr_extractor (pyseqlab.features_extraction.SeqsRepresenter attribute)
attr_represent_funcmapper() (pyseqlab.features_extraction.FeatureExtractor method)
attr_scaler (pyseqlab.features_extraction.SeqsRepresenter attribute)
AttributeScaler (class in pyseqlab.attributes_extraction)
B
beam_size (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
BoundNode (class in pyseqlab.utilities)
build_crf_model() (pyseqlab.workflow.GenericTrainingWorkflow method)
build_seqsinfo() (pyseqlab.workflow.TrainingWorkflowIterative method)
build_seqsinfo_from_seqfile() (pyseqlab.workflow.GenericTrainingWorkflow method)
build_seqsinfo_from_seqs() (pyseqlab.workflow.GenericTrainingWorkflow method)
C
cached_entitites() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
check_cached_info() (pyseqlab.linear_chain_crf.LCRF method)
check_gradient() (pyseqlab.linear_chain_crf.LCRF method)
check_prefix() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
check_suffix() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
cleanup() (pyseqlab.crf_learning.Learner method)
clear_cached_info() (pyseqlab.linear_chain_crf.LCRF method)
compute_backward_vec() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf.HOCRF method)
(pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf.HOSemiCRF method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
compute_bpotential() (pyseqlab.ho_crf.HOCRF method)
(pyseqlab.hosemi_crf.HOSemiCRF method)
compute_feature_expectation() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
compute_forward_vec() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
compute_fpotential() (pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
compute_marginals() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf.HOSemiCRF method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
compute_model_performance() (pyseqlab.crf_learning.Evaluator method)
compute_potential() (pyseqlab.fo_crf.FirstOrderCRF method)
compute_seq_gradient() (pyseqlab.ho_crf.HOCRF method)
(pyseqlab.linear_chain_crf.LCRF method)
compute_seq_loglikelihood() (pyseqlab.linear_chain_crf.LCRF method)
compute_seqs_gradient() (pyseqlab.linear_chain_crf.LCRF method)
compute_seqs_loglikelihood() (pyseqlab.linear_chain_crf.LCRF method)
compute_states_confmatrix() (pyseqlab.crf_learning.SeqDecodingEvaluator method)
compute_tags_confusionmatrix() (pyseqlab.crf_learning.Evaluator method)
cost (pyseqlab.utilities.AStarNode attribute)
create_directory() (in module pyseqlab.utilities)
create_model() (pyseqlab.features_extraction.SeqsRepresenter method)
D
DataFileParser (class in pyseqlab.utilities)
decode_seqs() (pyseqlab.linear_chain_crf.LCRF method)
def_cached_entities (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
delete_directory() (in module pyseqlab.utilities)
delete_file() (in module pyseqlab.utilities)
determine_attr_encoding() (pyseqlab.attributes_extraction.GenericAttributeExtractor method)
dump_data() (pyseqlab.utilities.ReaderWriter static method)
E
entry_count (pyseqlab.utilities.AStarAgenda attribute)
eval_model() (pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
Evaluator (class in pyseqlab.crf_learning)
extract_features_X() (pyseqlab.features_extraction.FeatureExtractor method)
extract_features_XY() (pyseqlab.features_extraction.FeatureExtractor method)
extract_features_Y() (pyseqlab.features_extraction.FeatureExtractor method)
(pyseqlab.features_extraction.FOFeatureExtractor method)
extract_seq_features_perboundary() (pyseqlab.features_extraction.FeatureExtractor method)
extract_seqs_globalfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
extract_seqs_modelactivefeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
F
f_transition (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
feature_extractor (pyseqlab.features_extraction.SeqsRepresenter attribute)
feature_filter_obj (pyseqlab.workflow.GenericTrainingWorkflow attribute)
FeatureExtractor (class in pyseqlab.features_extraction)
FeatureFilter (class in pyseqlab.features_extraction)
fextractor (pyseqlab.features_extraction.SeqsRepresenter attribute)
fextractor_obj (pyseqlab.workflow.GenericTrainingWorkflow attribute)
filter_activated_states() (pyseqlab.ho_crf_ad.HOCRFADModelRepresentation method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
(pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
filter_info (pyseqlab.features_extraction.FeatureFilter attribute)
find_activated_states() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
find_seg_activefeatures() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
find_ypatt_activefeatures() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
FirstOrderCRF (class in pyseqlab.fo_crf)
FirstOrderCRFModelRepresentation (class in pyseqlab.fo_crf)
flat_y (pyseqlab.utilities.SequenceStruct attribute)
flatten_segfeatures() (pyseqlab.features_extraction.FeatureExtractor method)
flatten_y() (pyseqlab.utilities.SequenceStruct method)
FO_AStarSearcher (class in pyseqlab.utilities)
FOFeatureExtractor (class in pyseqlab.features_extraction)
frwdlink (pyseqlab.utilities.AStarNode attribute)
fun_dict (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
G
generate_activefeatures() (pyseqlab.linear_chain_crf.LCRF method)
generate_attributes() (pyseqlab.attributes_extraction.GenericAttributeExtractor method)
(pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
generate_attributes_desc() (pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
generate_combinations() (pyseqlab.utilities.TemplateGenerator static method)
generate_datetime_str() (in module pyseqlab.utilities)
generate_instance_properties() (pyseqlab.fo_crf.FirstOrderCRFModelRepresentation method)
(pyseqlab.ho_crf.HOCRFModelRepresentation method)
(pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
(pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
generate_ngram() (pyseqlab.utilities.TemplateGenerator static method)
generate_partition_boundaries() (in module pyseqlab.utilities)
generate_partitions() (in module pyseqlab.utilities)
generate_template_XY() (pyseqlab.utilities.TemplateGenerator method)
generate_template_Y() (pyseqlab.utilities.TemplateGenerator method)
generate_trained_model() (in module pyseqlab.utilities)
generate_updated_model() (in module pyseqlab.utilities)
GenericAttributeExtractor (class in pyseqlab.attributes_extraction)
GenericTrainingWorkflow (class in pyseqlab.workflow)
get_backward_states() (pyseqlab.ho_crf.HOCRFModelRepresentation method)
get_backward_transitions() (pyseqlab.ho_crf.HOCRFModelRepresentation method)
(pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
get_child() (pyseqlab.utilities.BoundNode method)
get_conll00() (in module pyseqlab.utilities)
get_degenerateshape() (pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
get_forward_states() (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
get_forward_transition() (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
get_imposterseq_globalfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
get_inverted_modelfeatures() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
get_learned_crf() (pyseqlab.workflow.GenericTrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
get_modelfeatures_codebook() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
get_modelstates_codebook() (pyseqlab.fo_crf.FirstOrderCRFModelRepresentation method)
(pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
get_node_label() (pyseqlab.utilities.HO_AStarSearcher method)
(pyseqlab.utilities.HOSemi_AStarSearcher method)
get_num_chars() (pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
get_num_features() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
get_num_states() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
get_P_codebook_rev() (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
get_P_info() (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
get_performance_metric() (pyseqlab.crf_learning.SeqDecodingEvaluator method)
get_pi_pky_map() (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
get_pky_codebook() (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
get_S_info() (pyseqlab.ho_crf.HOCRFModelRepresentation method)
(pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
get_seg_bagofattributes() (pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
get_seg_length() (pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
get_seq_activatedstates() (pyseqlab.features_extraction.SeqsRepresenter method)
get_seq_activefeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
get_seq_globalfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
get_seq_lsegfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
get_seq_segfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
get_seqs_from_file() (pyseqlab.workflow.GenericTrainingWorkflow static method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
get_shape() (pyseqlab.attributes_extraction.NERSegmentAttributeExtractor method)
get_si_siy_codebook() (pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
get_si_ysk_map() (pyseqlab.ho_crf.HOCRFModelRepresentation method)
get_signature() (pyseqlab.utilities.BoundNode method)
get_siy_info() (pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
get_x_boundaries() (pyseqlab.utilities.SequenceStruct method)
get_y_boundaries() (pyseqlab.utilities.SequenceStruct method)
get_Y_codebook_reversed() (pyseqlab.fo_crf.FirstOrderCRFModelRepresentation method)
get_ysk_codebook() (pyseqlab.ho_crf.HOCRFModelRepresentation method)
get_Z_info() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
get_Z_pattern() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
group_attributes() (pyseqlab.attributes_extraction.GenericAttributeExtractor method)
group_seqs_by_length() (in module pyseqlab.utilities)
H
header (pyseqlab.utilities.DataFileParser attribute)
HO_AStarSearcher (class in pyseqlab.utilities)
HOCRF (class in pyseqlab.ho_crf)
HOCRFAD (class in pyseqlab.ho_crf_ad)
HOCRFADModelRepresentation (class in pyseqlab.ho_crf_ad)
HOCRFModelRepresentation (class in pyseqlab.ho_crf)
HOFeatureExtractor (class in pyseqlab.features_extraction)
HOSemi_AStarSearcher (class in pyseqlab.utilities)
HOSemiCRF (class in pyseqlab.hosemi_crf)
HOSemiCRFAD (class in pyseqlab.hosemi_crf_ad)
HOSemiCRFADModelRepresentation (class in pyseqlab.hosemi_crf_ad)
HOSemiCRFModelRepresentation (class in pyseqlab.hosemi_crf)
I
identify_activefeatures() (pyseqlab.linear_chain_crf.LCRF method)
infer_labels() (pyseqlab.utilities.FO_AStarSearcher method)
(pyseqlab.utilities.HOSemi_AStarSearcher method)
(pyseqlab.utilities.HO_AStarSearcher method)
J
join_segfeatures_filteredstates() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
K
keep_longest_elems() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
L
L (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
(pyseqlab.utilities.SequenceStruct attribute)
label (pyseqlab.utilities.AStarNode attribute)
LCRF (class in pyseqlab.linear_chain_crf)
LCRFModelRepresentation (class in pyseqlab.linear_chain_crf)
Learner (class in pyseqlab.crf_learning)
load_activatedstates() (pyseqlab.linear_chain_crf.LCRF method)
load_activefeatures() (pyseqlab.linear_chain_crf.LCRF method)
load_globalfeatures() (pyseqlab.linear_chain_crf.LCRF method)
load_imposter_globalfeatures() (pyseqlab.linear_chain_crf.LCRF method)
load_segfeatures() (pyseqlab.linear_chain_crf.LCRF method)
load_seq() (pyseqlab.features_extraction.SeqsRepresenter static method)
log_progress() (pyseqlab.utilities.ReaderWriter static method)
lookup_features_X() (pyseqlab.features_extraction.FeatureExtractor method)
lookup_seq_modelactivefeatures() (pyseqlab.features_extraction.FeatureExtractor method)
M
main() (in module pyseqlab.features_extraction)
map_pky_z() (pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
map_pred_to_ref_seqs() (pyseqlab.workflow.GenericTrainingWorkflow static method)
(pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
map_siy_z() (pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
map_states_to_num() (pyseqlab.crf_learning.Evaluator method)
(pyseqlab.crf_learning.SeqDecodingEvaluator method)
map_z_ysk() (pyseqlab.ho_crf.HOCRFModelRepresentation method)
max_patts_len (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
method (pyseqlab.attributes_extraction.AttributeScaler attribute)
model (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
model_class (pyseqlab.workflow.GenericTrainingWorkflow attribute)
model_repr (pyseqlab.crf_learning.Evaluator attribute)
(pyseqlab.crf_learning.SeqDecodingEvaluator attribute)
model_repr_class (pyseqlab.workflow.GenericTrainingWorkflow attribute)
modelfeatures (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
modelfeatures_codebook (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
modelfeatures_inverted (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
N
NERSegmentAttributeExtractor (class in pyseqlab.attributes_extraction)
nested_cv() (in module pyseqlab.utilities)
num_features (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
num_states (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
P
P_codebook (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
P_codebook_rev (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
(pyseqlab.utilities.HOSemi_AStarSearcher attribute)
(pyseqlab.utilities.HO_AStarSearcher attribute)
P_elems (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
(pyseqlab.utilities.HOSemi_AStarSearcher attribute)
(pyseqlab.utilities.HO_AStarSearcher attribute)
P_len (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
P_numchar (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
parse_header() (pyseqlab.utilities.DataFileParser method)
parse_line() (pyseqlab.utilities.DataFileParser method)
patts_len (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
perstate_posterior_decoding() (pyseqlab.fo_crf.FirstOrderCRF method)
pi_c (pyseqlab.utilities.AStarNode attribute)
pi_pky_map (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
pky_codebook (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
pop() (pyseqlab.utilities.AStarAgenda method)
position (pyseqlab.utilities.AStarNode attribute)
prepare_seqs() (pyseqlab.features_extraction.SeqsRepresenter method)
preprocess_attributes() (pyseqlab.features_extraction.SeqsRepresenter method)
print_node() (pyseqlab.utilities.AStarNode method)
prune_states() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
push() (pyseqlab.utilities.AStarAgenda method)
pyseqlab (module)
pyseqlab.attributes_extraction (module)
pyseqlab.crf_learning (module)
pyseqlab.features_extraction (module)
pyseqlab.fo_crf (module)
pyseqlab.ho_crf (module)
pyseqlab.ho_crf_ad (module)
pyseqlab.hosemi_crf (module)
pyseqlab.hosemi_crf_ad (module)
pyseqlab.linear_chain_crf (module)
pyseqlab.utilities (module)
pyseqlab.workflow (module)
Q
qagenda (pyseqlab.utilities.AStarAgenda attribute)
R
read_data() (pyseqlab.utilities.ReaderWriter static method)
read_file() (pyseqlab.utilities.DataFileParser method)
ReaderWriter (class in pyseqlab.utilities)
rel_func (pyseqlab.features_extraction.FeatureFilter attribute)
represent_activefeatures() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
represent_gfeatures() (pyseqlab.features_extraction.SeqsRepresenter method)
represent_globalfeature() (pyseqlab.linear_chain_crf.LCRF method)
represent_globalfeatures() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
represent_ypatt_filteredstates() (pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
root_dir (pyseqlab.workflow.GenericTrainingWorkflow attribute)
S
save() (pyseqlab.attributes_extraction.AttributeScaler method)
(pyseqlab.features_extraction.FeatureExtractor method)
(pyseqlab.features_extraction.SeqsRepresenter method)
(pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
save_model() (pyseqlab.linear_chain_crf.LCRF method)
scale_attributes() (pyseqlab.features_extraction.SeqsRepresenter method)
scale_continuous_attributes() (pyseqlab.attributes_extraction.AttributeScaler method)
scaling_info (pyseqlab.attributes_extraction.AttributeScaler attribute)
search() (pyseqlab.utilities.FO_AStarSearcher method)
(pyseqlab.utilities.HOSemi_AStarSearcher method)
(pyseqlab.utilities.HO_AStarSearcher method)
seg_attr (pyseqlab.attributes_extraction.GenericAttributeExtractor attribute)
(pyseqlab.attributes_extraction.NERSegmentAttributeExtractor attribute)
(pyseqlab.utilities.SequenceStruct attribute)
seg_other_symbol (pyseqlab.utilities.SequenceStruct attribute)
seq_parsing_workflow() (pyseqlab.workflow.GenericTrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
SeqDecodingEvaluator (class in pyseqlab.crf_learning)
seqs (pyseqlab.utilities.DataFileParser attribute)
seqs_info (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
,
[1]
seqs_representer (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
SeqsRepresenter (class in pyseqlab.features_extraction)
SequenceStruct (class in pyseqlab.utilities)
setup_model() (pyseqlab.fo_crf.FirstOrderCRFModelRepresentation method)
(pyseqlab.ho_crf.HOCRFModelRepresentation method)
(pyseqlab.hosemi_crf.HOSemiCRFModelRepresentation method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation method)
(pyseqlab.linear_chain_crf.LCRFModelRepresentation method)
split_data() (in module pyseqlab.utilities)
split_dataset() (pyseqlab.workflow.GenericTrainingWorkflow static method)
(pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
start_state (pyseqlab.features_extraction.FOFeatureExtractor attribute)
startstate_flag (pyseqlab.fo_crf.FirstOrderCRFModelRepresentation attribute)
T
T (pyseqlab.utilities.SequenceStruct attribute)
template_X (pyseqlab.features_extraction.FeatureExtractor attribute)
,
[1]
template_Y (pyseqlab.features_extraction.FeatureExtractor attribute)
,
[1]
TemplateGenerator (class in pyseqlab.utilities)
templateX (pyseqlab.features_extraction.FOFeatureExtractor attribute)
templateY (pyseqlab.features_extraction.FOFeatureExtractor attribute)
train_model() (pyseqlab.crf_learning.Learner method)
(pyseqlab.workflow.GenericTrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
traineval_folds() (pyseqlab.workflow.GenericTrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
TrainingWorkflow (class in pyseqlab.workflow)
TrainingWorkflowIterative (class in pyseqlab.workflow)
transform_codebook() (pyseqlab.crf_learning.Evaluator method)
transform_scale() (pyseqlab.attributes_extraction.AttributeScaler method)
U
update_X() (pyseqlab.utilities.DataFileParser method)
update_XY() (pyseqlab.utilities.DataFileParser method)
use_model() (pyseqlab.workflow.GenericTrainingWorkflow method)
V
validate_expected_featuresum() (pyseqlab.linear_chain_crf.LCRF method)
validate_forward_backward_pass() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf.HOCRF method)
(pyseqlab.linear_chain_crf.LCRF method)
validate_gradient() (pyseqlab.linear_chain_crf.LCRF method)
vectorized_logsumexp() (in module pyseqlab.utilities)
verify_template() (pyseqlab.workflow.GenericTrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflow method)
(pyseqlab.workflow.TrainingWorkflowIterative method)
viterbi() (pyseqlab.fo_crf.FirstOrderCRF method)
(pyseqlab.ho_crf_ad.HOCRFAD method)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD method)
(pyseqlab.linear_chain_crf.LCRF method)
W
weighted_sample() (in module pyseqlab.utilities)
weights (pyseqlab.fo_crf.FirstOrderCRF attribute)
(pyseqlab.ho_crf_ad.HOCRFAD attribute)
(pyseqlab.hosemi_crf_ad.HOSemiCRFAD attribute)
(pyseqlab.linear_chain_crf.LCRF attribute)
write_decoded_seqs() (pyseqlab.linear_chain_crf.LCRF method)
X
X (pyseqlab.utilities.SequenceStruct attribute)
,
[1]
Y
Y (pyseqlab.utilities.SequenceStruct attribute)
,
[1]
Y_codebook (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
Y_codebook_rev (pyseqlab.fo_crf.FirstOrderCRFModelRepresentation attribute)
(pyseqlab.utilities.FO_AStarSearcher attribute)
y_range (pyseqlab.utilities.SequenceStruct attribute)
y_sboundaries (pyseqlab.utilities.SequenceStruct attribute)
ypatt_activestates (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
ypatt_features (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
Z
Z_codebook (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
Z_elems (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
Z_len (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
Z_numchar (pyseqlab.linear_chain_crf.LCRFModelRepresentation attribute)
z_pi_piy_map (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
z_pky_map (pyseqlab.hosemi_crf_ad.HOSemiCRFADModelRepresentation attribute)
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